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PBR Gene Detail
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[VBRC|VP0031458] CHIKV-37997-E1 location: (9993..11312) VOC[890]: E1 VOC function: Envelope glycoprotein E1 [VBRC|VP0031457] CHIKV-37997-6k location: (9810..9992) VOC[889]: 6k VOC function: Structural protein 6K [VBRC|VP0031456] CHIKV-37997-E2 location: (8544..9809) VOC[888]: E2 VOC function: Envelope glycoprotein E2 [VBRC|VP0031455] CHIKV-37997-E3 location: (8349..8543) VOC[887]: E3 VOC function: Envelope glycoprotein E3 [VBRC|VP0031454] CHIKV-37997-C location: (7569..8348) VOC[885]: C VOC function: Capsid serine proteinase [VBRC|VP0031453] CHIKV-37997-sPP location: (7569..11315) VOC[886]: sPP VOC function: Structural polyprotein GenBank gene acc: AAU43881 GenBank locus name: str_polyprotein [VBRC|VP0031452] CHIKV-37997-RdRp location: (5646..7496) VOC[884]: RdRp VOC function: RNA-dependent RNA polymerase [VBRC|VP0031451] CHIKV-37997-NS3 location: (4074..5645) VOC[883]: NS3 VOC function: Phosphoesterase [VBRC|VP0031450] CHIKV-37997-NS2 location: (1683..4073) VOC[882]: NS2 VOC function: RNA helicase/protease [VBRC|VP0031449] CHIKV-37997-NS1 location: (78..1682) VOC[880]: NS1 VOC function: Methyl/guanyltransferase [VBRC|VP0031448] CHIKV-37997-nsPP location: (78..7502) VOC[881]: nsPP VOC function: Nonstructural polyprotein GenBank gene acc: AAU43880 GenBank locus name: ns_polyprotein
GENE VBRC accession: VP0031448 name: CHIKV-37997-nsPP
  (3 older abbreviations)
Protein Family (VOC) VOC ID: VBRC|VC881 name: NonStructural Polyprotein
  abbr: nsPP function: Nonstructural polyprotein
  alternate abbr: ns_polyprotein
GenBank locus: ns_polyprotein accession: AAU43880
Molecule type: polyprotein length: 7425 bp, 2474 aa
  molecular weight: 275,956 pI: 6.79
Annotation added: 6/7/2005 source: genbank
Annotations copied unmodified from GenBank record
Location (78..7502) in: Chikungunya virus strain 37997 (GenBank: AY726732)
VBRC Taxonomy Togaviridae>Alphavirus>Chikungunya virus
Protein Analysis   Blast Analysis   Sequence   Immune Epitopes   Curation   Notes  
Analysis Results VBRC Hits Evidence
Amino Acids Composition   IEA
Transmembrane Domains Number of domains: 0
(Select for Transmembrane Record) 		  IEA
Prosite Motifs No Hits   IEA
Coiled-coil Segments None IEA
Secretory Signal Peptides None   IEA
InterPro Hits
1.Viral RNA helicase 1
2.RNA-dependent RNA polymerase
3.Viral methyltransferase
4.Appr-1-p processing
5.Peptidase C9, alphavirus nsP2
6.RNA-directed RNA polymerase, positive-strand RNA eukaryotic virus
7.RNA-directed RNA polymerase, double-strand and positive-strand RNA virus
8.Penicillin-binding protein, transpeptidase fold
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 IEA
Gene Ontology ID
1.GO:0003723 : RNA binding
2.GO:0003724 : RNA helicase activity
3.GO:0003968 : RNA-directed RNA polymerase activity
4.GO:0008174 : mRNA methyltransferase activity
5.GO:0019079 : viral genome replication
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 IEA
PDB Hits
1.A mol:protein length:20 NONSTRUCTURAL PROTEIN NSP1
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 IEA
Protein-Protein Interaction No Hits   IEA
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